Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40884562_40885388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40884562 - 40885388

Intron Length:

827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTTAGTATC

5'SS Class:

major

3'SS Sequence:

TTGTTTTATTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTGTTTTATTC

Flanking Amino Acid:

AWEMKPYVTLAQQFKYKVMF

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

1.1

79.1

34.4

Major BPS

79.2

0.73

75.3

39.4

Major PPT

85.8

0.8

0.9

85.4

34.3

Minor 5ss

36.8

-1.5

2.7

44.7

36.8

Minor BPS

56.8

0.19

1.6

68.82

37.9

Associated Gene:

Gene:

N4BP2

Ensembl Gene ID:

ENSAPLG00000013613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030075

40872923 - 40902632

29710

ENSAPLT00000014194

40873386 - 40902632

29247