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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4088715_4089189_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4088715 - 4089189
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTGTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTGTTTTCACA
Flanking Amino Acid:
KETEKKSSDKVKADTVEGAD
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
61.4
0.26
1.1
57.3
43.3
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
52.7
0.08
1.8
66.82
40.3

Associated Gene:

Gene:
INTS12
Ensembl Gene ID:
ENSAPLG00000010592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011045
4082253 - 4091521
9269