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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40892449_40893173_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40892449 - 40893173
Intron Length:
725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATTT
Flanking Amino Acid:
IHEKWKESILKRRRRDESGS
Intron Amino Acid Position:
1416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
82
34.8
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
56.7
0.29
1.6
70.24
42.1

Associated Gene:

Gene:
N4BP2
Ensembl Gene ID:
ENSAPLG00000013613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014194
40873386 - 40902632
29247
ENSAPLT00000030075
40872923 - 40902632
29710