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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4089343_4091357_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4089343 - 4091357
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TTTCTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGCCTTCAACT
Flanking Amino Acid:
TDSSYRPSQKEVEQPKVSVS
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.9
0.81
0.7
84.8
30
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
66.9
0.61
1.5
81.76
39.7

Associated Gene:

Gene:
INTS12
Ensembl Gene ID:
ENSAPLG00000010592
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011045
4082253 - 4091521
9269