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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40894443_40894659_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40894443 - 40894659
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGATA
5'SS Class:
major
3'SS Sequence:
GTTTCACAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCATTTTAAAAT
Flanking Amino Acid:
EIAIQEKEDLIMVLFTIQKR
Intron Amino Acid Position:
1506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
37.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
65.6
0.35
1
60.1
39.8
Minor 5ss
42.1
-0.9
3.1
53.5
45.8
Minor BPS
52.1
0.15
1.7
68.96
42.3

Associated Gene:

Gene:
N4BP2
Ensembl Gene ID:
ENSAPLG00000013613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014194
40873386 - 40902632
29247