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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40897670_40899991_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40897670 - 40899991
Intron Length:
2322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCATAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTGCATAAAG
Flanking Amino Acid:
KSVAAFYAHQGRLHEQKMKE
Intron Amino Acid Position:
1662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
77.4
33.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
67.4
0.39
1.1
67.7
37.3
Minor 5ss
46.8
-0.3
3
64.4
47
Minor BPS
53.1
-0
2.2
69.83
43

Associated Gene:

Gene:
N4BP2
Ensembl Gene ID:
ENSAPLG00000013613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030075
40872923 - 40902632
29710
ENSAPLT00000014194
40873386 - 40902632
29247