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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40900161_40901648_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40900161 - 40901648
Intron Length:
1488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGAATTTTAACC
Flanking Amino Acid:
LSRVLQEKCEEYQQTGGKPY
Intron Amino Acid Position:
1718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.9
0.58
0.9
68.6
36
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
60.9
0.32
1.3
62.89
36

Associated Gene:

Gene:
N4BP2
Ensembl Gene ID:
ENSAPLG00000013613
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030075
40872923 - 40902632
29710
ENSAPLT00000014194
40873386 - 40902632
29247