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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_409244_410603_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
409244 - 410603
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATACCTT
5'SS Class:
major
3'SS Sequence:
TCTTAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATAAACG
Flanking Amino Acid:
SLDLEWEDEEGMNRMIPVRE
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
67.7
43.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.7
0.62
0.9
70.9
38.4
Minor 5ss
49.2
-0
2.9
73.5
43.2
Minor BPS
57.6
0.1
2
68.33
45

Associated Gene:

Gene:
AP1AR
Ensembl Gene ID:
ENSAPLG00000013936
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014532
395267 - 410869
15603