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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40967472_40968570_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40967472 - 40968570
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ACGTGTTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATGTACTGAACA
Flanking Amino Acid:
RLLFTAVMLQAVESAKGKYA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
63.6
0.31
1
55.1
44.4
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
62.4
0.39
1.7
72.16
39.3

Associated Gene:

Gene:
CHRNA9
Ensembl Gene ID:
ENSAPLG00000013711
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014289
40967402 - 40971611
4210