About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40968717_40969512_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40968717 - 40969512
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATATTTTTATTT
Flanking Amino Acid:
QITLSQIKDMDERNQILTAY
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.8
0.8
81.9
34.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
60.2
0.4
1.5
74.31
37.1

Associated Gene:

Gene:
CHRNA9
Ensembl Gene ID:
ENSAPLG00000013711
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014289
40967402 - 40971611
4210