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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40969668_40970236_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40969668 - 40970236
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TCAATCCTGACT
Flanking Amino Acid:
VWRPDIVLYNKADDDFSEPV
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.2
34.5
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
82.7
0.74
0.7
81.2
30.9
Minor 5ss
28.3
-2.5
3.1
31.3
36.6
Minor BPS
50.9
0.11
1.7
69.03
41.7

Associated Gene:

Gene:
CHRNA9
Ensembl Gene ID:
ENSAPLG00000013711
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014289
40967402 - 40971611
4210