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Intron Name: Anas_platyrhynchos_platyrhynchos_4_40970770_40971054_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40970770 - 40971054

Intron Length:

285

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGCTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

GCATCTTTAATA

Flanking Amino Acid:

MPPSENVPLIGKYYIATMTM

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

83.9

30.3

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

0.79

0.9

76.9

42.1

Minor 5ss

44.3

-0.6

3.1

64.1

47.4

Minor BPS

70.1

0.63

1.2

68.59

38.2

Associated Gene:

Gene:

CHRNA9

Ensembl Gene ID:

ENSAPLG00000013711

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014289

40967402 - 40971611

4210