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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_40998980_40999637_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40998980 - 40999637
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTCCAATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCAAT
U12 Branch Point Sequence:
CTTTCTGCAACT
Flanking Amino Acid:
PAVSTPPPFQGRPITPVYTM
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
59.5
0.24
1.3
68.4
35.9
Major PPT
70.3
0.46
0.9
59.5
40.1
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
54.5
0.22
2.2
79.65
42.8

Associated Gene:

Gene:
RBM47
Ensembl Gene ID:
ENSAPLG00000013974
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014554
40998722 - 41016131
17410