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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41130090_41130489_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41130090 - 41130489
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TATAACTTGAGA
Flanking Amino Acid:
SYELAFNALKYQEFLEEILL
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
50.8
0.02
1.9
65.33
40.6

Associated Gene:

Gene:
NSUN7
Ensembl Gene ID:
ENSAPLG00000006738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045163
41127188 - 41144096
16909
ENSAPLT00000024279
41129104 - 41144096
14993
ENSAPLT00000006996
41127188 - 41172567
45380
ENSAPLT00000046104
41127188 - 41167414
40227