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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4113094_4113783_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4113094 - 4113783
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTTAA
5'SS Class:
major
3'SS Sequence:
CTCTTTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
GPRPTMTKLMESGIEAKFSP
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
74.8
30.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
72.6
0.51
0.8
68.9
30.6
Minor 5ss
39.7
-1.2
2.8
46.3
44.2
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
GSTCD
Ensembl Gene ID:
ENSAPLG00000016467
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040239
4104569 - 4166573
62005