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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41131676_41133040_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41131676 - 41133040
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTATGTTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACGTATTAAACC
Flanking Amino Acid:
EVRKIEHFLYSFRIKLAAAL
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.4
41.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.9
0.63
0.9
73.1
37
Minor 5ss
49.1
-0.1
2.5
65.5
45.8
Minor BPS
48.7
-0.1
1.8
56.97
42.1

Associated Gene:

Gene:
NSUN7
Ensembl Gene ID:
ENSAPLG00000006738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045163
41127188 - 41144096
16909
ENSAPLT00000024279
41129104 - 41144096
14993
ENSAPLT00000006996
41127188 - 41172567
45380
ENSAPLT00000046104
41127188 - 41167414
40227