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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41133194_41134583_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41133194 - 41134583
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
TGTATGTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTATGTTAACA
Flanking Amino Acid:
LCVWINTFKTSLQDVVRDLK
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.3
0.48
1.1
65.7
44.2
Minor 5ss
46.1
-0.4
2.9
66.5
44.4
Minor BPS
57.8
0.24
2.1
72.48
39.3

Associated Gene:

Gene:
NSUN7
Ensembl Gene ID:
ENSAPLG00000006738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046104
41127188 - 41167414
40227
ENSAPLT00000045163
41127188 - 41144096
16909
ENSAPLT00000024279
41129104 - 41144096
14993
ENSAPLT00000006996
41127188 - 41172567
45380