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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41136803_41137521_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41136803 - 41137521
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTATTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATAAATT
Flanking Amino Acid:
PIDFILSEHGDAGLLRDLLQ
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.2
0.73
0.9
82
34.8
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
50.4
0.09
2.1
75.53
40.9

Associated Gene:

Gene:
NSUN7
Ensembl Gene ID:
ENSAPLG00000006738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006996
41127188 - 41172567
45380
ENSAPLT00000046104
41127188 - 41167414
40227
ENSAPLT00000045163
41127188 - 41144096
16909
ENSAPLT00000024279
41129104 - 41144096
14993