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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41137624_41138132_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41137624 - 41138132
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATTT
Flanking Amino Acid:
QLTELMHAMKFKVQAIVYCT
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
65.4
0.56
1.5
80.16
36.3

Associated Gene:

Gene:
NSUN7
Ensembl Gene ID:
ENSAPLG00000006738
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045163
41127188 - 41144096
16909
ENSAPLT00000024279
41129104 - 41144096
14993
ENSAPLT00000006996
41127188 - 41172567
45380
ENSAPLT00000046104
41127188 - 41167414
40227