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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4113878_4151986_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4113878 - 4151986
Intron Length:
38109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTCTCTGTCATC
Flanking Amino Acid:
NLPSAVSPGEGKMSSDRALR
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
78.3
0.7
1
80
32.1
Major PPT
71.2
0.48
0.9
62.3
38.8
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
47.4
-0.2
2.3
65.01
41.9

Associated Gene:

Gene:
GSTCD
Ensembl Gene ID:
ENSAPLG00000016467
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040239
4104569 - 4166573
62005