Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41143073_41167384_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41143073 - 41167384

Intron Length:

24312

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGATT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

GAAGAAATAATA

Flanking Amino Acid:

LKLSSRFTEKVVNLGVPPF*

Intron Amino Acid Position:

727

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.7

1.03

0.8

91.6

26.4

Major BPS

71.2

0.53

70.3

31.9

Major PPT

84.7

0.78

0.8

76.7

37.5

Minor 5ss

38.2

-1.3

3.4

56.9

47.4

Minor BPS

40.1

-0.7

1.9

45.91

36.2

Associated Gene:

Gene:

NSUN7

Ensembl Gene ID:

ENSAPLG00000006738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046104

41127188 - 41167414

40227