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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41151665_41154015_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41151665 - 41154015
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CATTTTTGAAAA
Flanking Amino Acid:
ATSLHEICSKIMAERKNAKA
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.7
83.7
31
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.1
0.72
0.9
81.1
35.6
Minor 5ss
21.7
-3.3
3.8
31.8
42.6
Minor BPS
53.1
0.09
1.5
62.1
37.9

Associated Gene:

Gene:
APBB2
Ensembl Gene ID:
ENSAPLG00000006759
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032205
41147407 - 41293764
146358
ENSAPLT00000026057
41148407 - 41244409
96003
ENSAPLT00000007023
41147407 - 41249883
102477
ENSAPLT00000040608
41121623 - 41293764
172142
ENSAPLT00000034018
41147407 - 41293764
146358