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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41183930_41188838_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41183930 - 41188838
Intron Length:
4909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGAGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TACTCTGTAACT
Flanking Amino Acid:
IRDTVGIWGEGKDMYLILEN
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
69.8
0.45
1
61.7
43.6
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
62.9
0.48
2
80.6
41.6

Associated Gene:

Gene:
APBB2
Ensembl Gene ID:
ENSAPLG00000006759
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032205
41147407 - 41293764
146358
ENSAPLT00000026057
41148407 - 41244409
96003
ENSAPLT00000007023
41147407 - 41249883
102477
ENSAPLT00000040608
41121623 - 41293764
172142
ENSAPLT00000034018
41147407 - 41293764
146358