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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41232499_41244342_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41232499 - 41244342
Intron Length:
11844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTTACT
Flanking Amino Acid:
SAEDSTRSASFDSGVDALAV
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.4
36.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.7
0.83
0.7
81.2
30.6
Minor 5ss
36.9
-1.5
3
49.2
40.2
Minor BPS
67.9
0.64
1.6
82.93
38.6

Associated Gene:

Gene:
APBB2
Ensembl Gene ID:
ENSAPLG00000006759
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026057
41148407 - 41244409
96003