Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41232499_41247072_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41232499 - 41247072

Intron Length:

14574

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTACGTATG

5'SS Class:

major

3'SS Sequence:

TTTACTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TCTTTTTTTACT

Flanking Amino Acid:

PGAHYRPSSSFDSGVDALAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.2

0.38

1.2

65.8

45.4

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

86.7

0.83

0.7

81.2

30.6

Minor 5ss

40.3

-1.1

3.1

51.5

45.1

Minor BPS

67.9

0.64

1.6

82.93

38.6

Associated Gene:

Gene:

APBB2

Ensembl Gene ID:

ENSAPLG00000006759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032205

41147407 - 41293764

146358

ENSAPLT00000040608

41121623 - 41293764

172142

ENSAPLT00000034018

41147407 - 41293764

146358