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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41247183_41249770_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
41247183 - 41249770
Intron Length:
2588

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TAAATCTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.1
0.68
0.7
72.7
32.1
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
57.7
0.32
1.8
74.59
41.8

Associated Gene:

Gene:
APBB2
Ensembl Gene ID:
ENSAPLG00000006759
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007023
41147407 - 41249883
102477