About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41247183_41258464_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
41247183 - 41258464
Intron Length:
11282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TAAATCTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
77.5
0.68
1
79.6
33
Major PPT
80.1
0.68
0.7
72.7
32.1
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
57.7
0.32
1.8
74.59
41.8

Associated Gene:

Gene:
APBB2
Ensembl Gene ID:
ENSAPLG00000006759
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045671
41230696 - 41258563
27868
ENSAPLT00000032205
41147407 - 41293764
146358
ENSAPLT00000043340
41229576 - 41258563
28988
ENSAPLT00000040608
41121623 - 41293764
172142
ENSAPLT00000034018
41147407 - 41293764
146358