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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41323143_41323508_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41323143 - 41323508
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
GGTCTGTCCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AGTCTATTAACT
Flanking Amino Acid:
NSVAQEGQCRVDDNSVNFHF
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
58
0.18
1.1
60.1
40.7
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
63
0.49
1.6
78.05
37.3

Associated Gene:

Gene:
UCHL1
Ensembl Gene ID:
ENSAPLG00000007078
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047028
41320036 - 41324708
4673
ENSAPLT00000007393
41320036 - 41324708
4673