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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41324003_41324272_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41324003 - 41324272
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTCTTTTAAG
Flanking Amino Acid:
GTSSDDLLLKDSAKICRQFT
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.6
0.8
0.9
91.1
21.3
Minor 5ss
37.9
-1.4
3.3
56.5
47.6
Minor BPS
62.7
0.26
1.8
72.54
40

Associated Gene:

Gene:
UCHL1
Ensembl Gene ID:
ENSAPLG00000007078
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047028
41320036 - 41324708
4673
ENSAPLT00000007393
41320036 - 41324708
4673