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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41326655_41339727_F

Intron Information:

Intron Rank:
131027
Intron Class:
major
Intron Phase:
Intron Coordinates:
41326655 - 41339727
Intron Length:
13073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
TGACCCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
66.4
0.37
0.8
58
33.2
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
48.3
-0
2
67.74
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017400
41326577 - 41342131
15555