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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41339837_41341276_F

Intron Information:

Intron Rank:
131029
Intron Class:
major
Intron Phase:
Intron Coordinates:
41339837 - 41341276
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
84.3
0.77
0.9
90.2
22.9
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020386
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034525
41339656 - 41341447
1792