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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41404532_41409822_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41404532 - 41409822
Intron Length:
5291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
TACTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCCCCCTACTT
Flanking Amino Acid:
TFPDLTLKLWQVTGRSFGEK
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
77.9
38.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
88.4
0.86
0.7
83.4
31.3
Minor 5ss
35.6
-1.6
3.1
42.1
44.8
Minor BPS
51.1
0.11
2
73.93
43.1

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007801
41404460 - 41516480
112021