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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41409894_41422386_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41409894 - 41422386
Intron Length:
12493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTCATGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTGACTTAACA
Flanking Amino Acid:
SGLENGILLCELLNAIKPGL
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77
0.61
1
73.4
35.8
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
69
0.59
1.6
77.36
39.2

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037711
41347255 - 41516480
169226
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000039937
41347255 - 41516480
169226