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Intron Name: Anas_platyrhynchos_platyrhynchos_4_41422457_41448086_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41422457 - 41448086

Intron Length:

25630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TGCCTTGTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTAGAA

U12 Branch Point Sequence:

TTAGAAGTATTT

Flanking Amino Acid:

NRLPTPIAGLDNIILFLRGC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.8

84.9

26.2

Major BPS

52.2

0.06

1.3

52.7

43.2

Major PPT

78.9

0.65

0.9

76.1

37.8

Minor 5ss

-1.8

2.8

39.2

40.5

Minor BPS

37.6

-0.8

2.4

58.67

44.5

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000038813

41347255 - 41516480

169226

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000037141

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000039937

41347255 - 41516480

169226