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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41454540_41459015_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41454540 - 41459015
Intron Length:
4476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTT
5'SS Class:
major
3'SS Sequence:
TACTCCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGAAGA
Flanking Amino Acid:
FEGLLAQMRKETEDIESPKR
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
74.1
36.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
68.6
0.42
0.9
63.2
32.9
Minor 5ss
48.8
-0.1
3.1
73.2
43.6
Minor BPS
48.7
-0.1
2
64.76
41.6

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000037711
41347255 - 41516480
169226