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Intron Name: Anas_platyrhynchos_platyrhynchos_4_41459212_41463571_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41459212 - 41463571

Intron Length:

4360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCCTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

CCTTCCTCACTA

Flanking Amino Acid:

PDVVLRGSSDGRGSDSETDL

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.8

80.6

31.8

Major BPS

58.9

0.22

49.8

35.1

Major PPT

69.4

0.44

0.8

63.1

Minor 5ss

35.5

-1.6

3.3

47.5

42.3

Minor BPS

51.9

0.06

1.9

62.86

44.2

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000039937

41347255 - 41516480

169226

ENSAPLT00000028057

41425097 - 41516480

91384

ENSAPLT00000038813

41347255 - 41516480

169226

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037141

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226