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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41464749_41476531_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41464749 - 41476531
Intron Length:
11783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCCCA
5'SS Class:
major
3'SS Sequence:
TTTGGTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTACCAACACT
Flanking Amino Acid:
KVMSAAQRYGRFGPRTAVSD
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
63.7
42.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
79.3
0.66
0.9
73.9
36.8
Minor 5ss
34.5
-1.8
2.8
40.8
44.9
Minor BPS
47.8
-0
2.4
77.66
44.4

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039937
41347255 - 41516480
169226
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000022003
41347255 - 41516480
169226