Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41469833_41476531_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41469833 - 41476531

Intron Length:

6699

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGTGCATT

5'SS Class:

strong_major

3'SS Sequence:

TTTGGTCTTGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

TTTACCAACACT

Flanking Amino Acid:

PLQVEKQEHARFGPRTAVSD

Intron Amino Acid Position:

404

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

0.9

79.6

35.4

Major BPS

82.2

0.8

0.9

81.6

Major PPT

79.3

0.66

0.9

73.9

36.8

Minor 5ss

-0.4

2.8

65.5

45.8

Minor BPS

47.8

-0

2.4

77.66

44.4

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048073

41347255 - 41516480

169226

ENSAPLT00000034491

41347255 - 41516480

169226