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Intron Name: Anas_platyrhynchos_platyrhynchos_4_41476568_41481780_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41476568 - 41481780

Intron Length:

5213

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTTGT

5'SS Class:

major

3'SS Sequence:

CCTCATCGTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TATTCCCTCATC

Flanking Amino Acid:

GPRTAVSDDAESVSMFDMRC

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

72.5

39.9

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

67.8

0.4

0.9

65.4

35.8

Minor 5ss

43.2

-0.7

2.8

54.8

43.5

Minor BPS

55.6

0.16

2.1

72.32

38.8

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037141

41347255 - 41516480

169226

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226

ENSAPLT00000028057

41425097 - 41516480

91384

ENSAPLT00000039937

41347255 - 41516480

169226