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Intron Name: Anas_platyrhynchos_platyrhynchos_4_41481908_41484095_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41481908 - 41484095

Intron Length:

2188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTACAT

U12 Branch Point Sequence:

TCTACATTCAGC

Flanking Amino Acid:

LKEDETRWQDDLARWKSRRR

Intron Amino Acid Position:

358

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

79.6

28.3

Major BPS

70.2

0.5

1.1

77.2

Major PPT

78.2

0.63

0.7

72.8

25.4

Minor 5ss

33.2

-1.9

3.4

44.6

43.6

Minor BPS

45.3

-0.3

2.3

59.91

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000039937

41347255 - 41516480

169226

ENSAPLT00000028057

41425097 - 41516480

91384

ENSAPLT00000038813

41347255 - 41516480

169226

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037141

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226