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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41484251_41484443_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41484251 - 41484443
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTTCTTGTATT
Flanking Amino Acid:
IKTYREIVEEKERRERELHE
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
84.8
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.1
0.66
0.8
74
29.9
Minor 5ss
42.3
-0.8
3.1
59.9
38.7
Minor BPS
55.9
0.27
1.8
76.12
40.9

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000039937
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000037711
41347255 - 41516480
169226
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226