About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41484847_41488235_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41484847 - 41488235
Intron Length:
3389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTATTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACT
Flanking Amino Acid:
NTQEVLKNFKVDGKVSVNGE
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
72.1
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.2
0.66
0.9
73.3
36.9
Minor 5ss
36.8
-1.5
3.3
49.4
47.1
Minor BPS
78.3
0.97
1.3
91.5
30.9

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000039937
41347255 - 41516480
169226
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037711
41347255 - 41516480
169226