Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41488458_41497037_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41488458 - 41497037

Intron Length:

8580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGAGCA

5'SS Class:

major

3'SS Sequence:

CCATCCTCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTATTTCCAGT

Flanking Amino Acid:

ATQSVHKEPTASPGEVDPAA

Intron Amino Acid Position:

618

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

62.8

35.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

76.6

0.6

0.8

73.2

31.4

Minor 5ss

32.9

-1.9

3.4

45.4

43.3

Minor BPS

-0.3

2.2

67.86

43.5

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226

ENSAPLT00000028057

41425097 - 41516480

91384

ENSAPLT00000039937

41347255 - 41516480

169226

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000038813

41347255 - 41516480

169226