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Intron Name: Anas_platyrhynchos_platyrhynchos_4_41497132_41499166_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

41497132 - 41499166

Intron Length:

2035

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGGC

5'SS Class:

strong_major

3'SS Sequence:

ATGTGTGGATTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATCTTAA

U12 Branch Point Sequence:

TATGTGTGGATT

Flanking Amino Acid:

GPGSPLGASPGSDQKQFKST

Intron Amino Acid Position:

649

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

67.2

38.1

Major BPS

73.4

0.58

0.9

63.7

35.1

Major PPT

53.3

0.08

1.1

52.1

46.4

Minor 5ss

26.2

-2.7

3.2

34.3

Minor BPS

43.6

-0.4

2.2

63.45

41.5

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028057

41425097 - 41516480

91384

ENSAPLT00000038813

41347255 - 41516480

169226

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037141

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000039937

41347255 - 41516480

169226