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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41499340_41499969_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41499340 - 41499969
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACG
5'SS Class:
strong_major
3'SS Sequence:
AACATCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTCCCAAACA
Flanking Amino Acid:
KEIVLRATQEVIKPKALEQE
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
62
0.27
1
55.3
39.2
Minor 5ss
42.1
-0.9
2.4
51.8
44.8
Minor BPS
60.5
0.33
2
77.12
39.5

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000039937
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000037711
41347255 - 41516480
169226
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226