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Intron Name: Anas_platyrhynchos_platyrhynchos_4_41506551_41507447_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41506551 - 41507447

Intron Length:

897

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGATC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTGTTGGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

CTTTATTTATAC

Flanking Amino Acid:

KENERWQEKRSGNKVLSGHP

Intron Amino Acid Position:

891

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

78.6

35.4

Major BPS

88.7

0.96

0.8

36.5

Major PPT

82.8

0.74

80.6

Minor 5ss

42.9

-0.8

3.1

59.7

45.1

Minor BPS

49.5

-0

1.9

64.25

41.4

Associated Gene:

Gene:

LIMCH1

Ensembl Gene ID:

ENSAPLG00000007483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022003

41347255 - 41516480

169226

ENSAPLT00000037711

41347255 - 41516480

169226

ENSAPLT00000007801

41404460 - 41516480

112021

ENSAPLT00000037141

41347255 - 41516480

169226

ENSAPLT00000048073

41347255 - 41516480

169226

ENSAPLT00000034491

41347255 - 41516480

169226

ENSAPLT00000039937

41347255 - 41516480

169226

ENSAPLT00000028057

41425097 - 41516480

91384

ENSAPLT00000038813

41347255 - 41516480

169226