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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41512942_41513882_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41512942 - 41513882
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGTCTC
5'SS Class:
major
3'SS Sequence:
CTTCAATTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TGTGCTTCAATT
Flanking Amino Acid:
GLYFHIQCFRCGICKGQLGD
Intron Amino Acid Position:
1039

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.1
67.3
44.3
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
70
0.45
1
64.9
40.1
Minor 5ss
37.3
-1.4
3.2
44.6
43.3
Minor BPS
60.7
0.41
1.6
76.63
40.5

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000039937
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000037711
41347255 - 41516480
169226