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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_41513986_41516454_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41513986 - 41516454
Intron Length:
2469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
AATGACTGAATT
Flanking Amino Acid:
NCNDCYIRSRTAGQPTTL*
Intron Amino Acid Position:
1073

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
91.6
0.94
0.6
84.4
30.5
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
52.1
0.15
1.7
69.79
40.8

Associated Gene:

Gene:
LIMCH1
Ensembl Gene ID:
ENSAPLG00000007483
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007801
41404460 - 41516480
112021
ENSAPLT00000037141
41347255 - 41516480
169226
ENSAPLT00000048073
41347255 - 41516480
169226
ENSAPLT00000034491
41347255 - 41516480
169226
ENSAPLT00000039937
41347255 - 41516480
169226
ENSAPLT00000028057
41425097 - 41516480
91384
ENSAPLT00000038813
41347255 - 41516480
169226
ENSAPLT00000022003
41347255 - 41516480
169226
ENSAPLT00000037711
41347255 - 41516480
169226