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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4152103_4152737_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4152103 - 4152737
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTGGTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TTGGTTTTCACA
Flanking Amino Acid:
DVIVDFCSGGGHVGIVLAYM
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
70.4
42.5
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
80.8
0.69
0.9
75.8
38.1
Minor 5ss
38
-1.4
3.3
47.2
48.2
Minor BPS
51.6
0.04
1.8
65.7
41.8

Associated Gene:

Gene:
GSTCD
Ensembl Gene ID:
ENSAPLG00000016467
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040239
4104569 - 4166573
62005