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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_4152783_4154465_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4152783 - 4154465
Intron Length:
1683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
GTATGAAATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TGTGTATGAAAT
Flanking Amino Acid:
VLAYMLPSCQVVLIENKELS
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
55.9
0.13
1.1
45.7
45
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
47.2
-0.1
1.9
68.03
42.1

Associated Gene:

Gene:
GSTCD
Ensembl Gene ID:
ENSAPLG00000016467
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040239
4104569 - 4166573
62005